Scaffold Ga0126321_1132936

Overview

Basic Information

• Taxon OID: 3300010145
• Scaffold ID: Ga0126321_1132936
• Source Dataset Name: Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4548
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location

• Location Name: Kohala Peninsula, Hawa'ii
• Coordinates
  • Lat. (^o): 20.147
  • Long. (^o): -155.8342
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001875	Metagenome / Metatranscriptome	623	Y
F002087	Metagenome / Metatranscriptome	595	Y
F011677	Metagenome / Metatranscriptome	288	Y
F077484	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126321_11329363	F011677	AGGAG	MELHTRVALIDTLREEADQKMQALHHALAAQERAKDARQHAGPDTPLAPEGATLTYEQDLWQRVCTSLTEVRTLLEDLEESERQRELSQ*
Ga0126321_11329364	F002087	AGGAG	MEPRKRTHLVNELMQEAHLMMGVLEKAMQGERLEESHPTLHGAHHPQGPYSLEEEHKSWGKVLRALTDMQTELEQIEQSEHQRIAQ*
Ga0126321_11329365	F001875	GGAG	MTEQNQARDLLATLRDALHQLEVSLERTRDGVEEIASQTERLRAGVEALGELRQREDTSVGIEMFVDAAVDLLEAFRELESGILDVQAEVDTLEAAMADDGHGPEG*
Ga0126321_11329366	F077484	AGGAG	MAHSFFHLTTPRPAPSEENPLLALTPEAFDAFCVEAQPLLQALVETVTAYSEAHPELRLMACYIAADMLREMLR