Scaffold Ga0126322_1151386

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0126322_1151386

Scaffold Ga0126322_1151386

Overview

Basic Information
Taxon OID	3300010143 Open in IMG/M
Scaffold ID	Ga0126322_1151386 Open in IMG/M
Source Dataset Name	Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	573
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location Name	Mekong River Delta, Cambodia
Coordinates	Lat. (^o)	11.5058	Long. (^o)	105.0087	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010404	Metagenome / Metatranscriptome	304	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126322_11513861	F010404	AGAAG	MQPFTLLQRRSALRQIPAAGSTLLAYIFEAALEFQLARSATRSRPRLAFFRLTGLVHCESPVANFLS*

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