Scaffold Ga0127498_1016553

Overview

Basic Information

• Taxon OID: 3300010124
• Scaffold ID: Ga0127498_1016553
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 828
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018883	Metagenome / Metatranscriptome	232	Y
F024751	Metagenome / Metatranscriptome	204	Y
F088428	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127498_10165531	F024751	N/A	KRAIVLALMLVTVLVPLVGVAHADVRSDEAAPQAP*
Ga0127498_10165532	F018883	AGGAG	MRYQVMLAAMALGVAMSFGHAAAESPDAGYGAREVGTVRFIDRALNLIQLDDGTELRTTDPRVLRNIKEGMRVQVDFTNDGASRNEINSIAPVGAGSQQVDVSPTTGD*
Ga0127498_10165533	F088428	N/A	MTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARREELGQTQTLTPPQKQPNAS*