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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300010112 Open in IMG/M |
| Scaffold ID | Ga0127458_1143325 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1722 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Angelo Coastal Reserve, California | |||||||
| Coordinates | Lat. (o) | 39.7181 | Long. (o) | -123.6527 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016640 | Metagenome / Metatranscriptome | 245 | Y |
| F055478 | Metagenome / Metatranscriptome | 138 | Y |
| F064480 | Metagenome / Metatranscriptome | 128 | Y |
| F105847 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0127458_11433252 | F105847 | N/A | MATLDRALLMGHATIGPLAPREKEEFPMATYHTIRGQILARVPGIDLADIPSLLQMLVSTARGPEWRDLTQVRHALAGLETLWVEELADLREAIAAQQQDGLTRGLTAPETEAEVMAS* |
| Ga0127458_11433253 | F016640 | AGAAGG | MTSLIIVVVVMACAGWMAWGRWTYWRTPIRPQPSAERSPQTRALEAFTHGNSCLAAGQLADATAAFEQARTLDPKRPYVAERLAEVVRRQHAASAPAPVAAGG* |
| Ga0127458_11433254 | F055478 | AGGAGG | MHPSMTRWRMRGMDACTVEALARWQQKRDRWIGPRAPQTERTRRRPWVMQPHTAHPA* |
| Ga0127458_11433255 | F064480 | AGGAG | MRSTTDHRSTTDHIHEGRDQTAPPPTDARGPEGTMYAPPETEASFEEIER* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |