Scaffold Ga0127458_1016961

Overview

Basic Information

• Taxon OID: 3300010112
• Scaffold ID: Ga0127458_1016961
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1650
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000329	Metagenome / Metatranscriptome	1287	Y
F004984	Metagenome / Metatranscriptome	416	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127458_10169611	F000329	GGAGG	MEGKAMVAEQEAQAFSEESLLVGEPVTLVIEDERFFGWVAAASQAHSLVRVPIEFKRGDKRVQELIPVENIQRLKAYLQAHPELRKAKEQEA*
Ga0127458_10169612	F004984	AGCAGG	MSPTAEQIHDATATFTECRRLVHGGRVQAGIQYLMRRWRAIPAVLQTRFLHTEFLTLPADTQAGITDLLHVRSREAGIVERTAALRHQMRADRAQTARLDAVEAGITTAYRTRWHQLGGFAAFFALAALLLYFARVL*