NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126316_1075868

Scaffold Ga0126316_1075868


Overview

Basic Information
Taxon OID3300010110 Open in IMG/M
Scaffold IDGa0126316_1075868 Open in IMG/M
Source Dataset NameSoil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)680
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Microbial Communities From Various Locations In Usa And Cambodia To Study Soil Gas Exchange Rates

Source Dataset Sampling Location
Location NameFluxnet siteBondville, Illinois
CoordinatesLat. (o)40.0062Long. (o)-88.2904Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018301Metagenome / Metatranscriptome235Y

Sequences

Protein IDFamilyRBSSequence
Ga0126316_10758681F018301AGGAMSPKVHQTNGTDNDDQGLSARDRKQLDRLGKLWKSDAERGLKTRHQMGRVLNKQVGPPAMRKAHGRRVLEVDGAELGIAPSDLNRMGWFSHLFPDFSDFRTQHPEIDSWTRFKTELPNLKPAKGGKARQPVANPSNPALGGVARSFANLTSKLNGLDIRPAGAERQKLVDALRELAVAASRRLKIKVEVAVGVKERKPVVTKRTGRVARA*
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