Scaffold Ga0127453_1054384

Overview

Basic Information

• Taxon OID: 3300010102
• Scaffold ID: Ga0127453_1054384
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_1 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2511
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042835	Metagenome / Metatranscriptome	157	N
F058881	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0127453_10543842	F042835	N/A	VRGGEFFKFFKFLLFVLLTAGIVSGQASPPDEKIKADVRTIQNAVNEIMGTPVPGGGVLQVARGAYLDGYGIVVSLEVAFDPPVNPFTPQKSPEEIRTTATQRLKEAQEKLTSVLKQKVALLESIAPSDSVSVILNILNTNPAYLPDMPSQVIFSVKKQDTARVSIKSYK*
Ga0127453_10543843	F058881	GAGG	MAHLGDKLAEYFYEELSSAEMAEARKHVDACKECRLEFERFERIHLALRTAPELEPPRRVVFSPLARRSWFSWLEWRTAATASAAAALVAGVVIGFSHVDHNRVIDEARQSDRAWLVEELNKRDAEIQRLRGELTYYENFQRAVMRETLENGSAIQLLAQRARRGIL*