Scaffold Ga0127454_1049133

Overview

Basic Information

• Taxon OID: 3300010089
• Scaffold ID: Ga0127454_1049133
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 571
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: Angelo Coastal Reserve, California
• Coordinates
  • Lat. (^o): 39.7181
  • Long. (^o): -123.6527
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014197	Metagenome / Metatranscriptome	265	Y
F021372	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0127454_10491331	F014197	N/A	RAGVIAPLILERDAALAELRKQGLTVRLHSRENNTWHIADGGLYSGYIASGDELIELRRANNLNIRGIKSLG*
Ga0127454_10491332	F021372	GAG	MKLHQDQNLERVLESAVVASWADLMRGRQNGLIHIEYGFAASGILDHLQVWSSIKRGYWLLACSYWMTASKLHDSGVHFDNGYQSEDLASILAVVMQHQ