Scaffold Ga0126373_10474635

Overview

Basic Information

• Taxon OID: 3300010048
• Scaffold ID: Ga0126373_10474635
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1289
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001528	Metagenome / Metatranscriptome	677	Y
F008431	Metagenome / Metatranscriptome	333	Y
F037974	Metagenome / Metatranscriptome	167	N
F052953	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126373_104746351	F008431	N/A	AFRAKLTFYRVSEFQTRAEIGPSGEPILRKEALKRRNPAS*
Ga0126373_104746352	F001528	AGGAG	MSERNQTVVILIVALLVGAFVDRITALKITAGVVLLWSLQNQPAVLGGIRKLFSLVRRRPSVREYRAN*
Ga0126373_104746353	F052953	AGGAG	MNLDTLEKTDGLNGVDDCGTEEPAAGWREMREFVDEIERNYSLEEIPDDDWEIFIEYCAALGQPVSDRDLLRKKHPELYPEEIDFMLSPPQDGDCPF*
Ga0126373_104746354	F037974	GAG	MNHAADILRVKQIVIDEEGNVAKRFPRIDQEGQLKNTLLFATYPEICVVSMQVPSGLLDAYEQARISQSLMRVRYE