NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126373_10311987

Scaffold Ga0126373_10311987


Overview

Basic Information
Taxon OID3300010048 Open in IMG/M
Scaffold IDGa0126373_10311987 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1572
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003018Metagenome / Metatranscriptome513Y
F007784Metagenome / Metatranscriptome345Y

Sequences

Protein IDFamilyRBSSequence
Ga0126373_103119871F003018AGGMADRDAWEKAESFSKIFAALVIPVVLGFASFYANQTLEKSKTKDELLKQAIQVVFLDKSDQMAGADKSFESRRAHRSHWLEIYNSLSDVKLSDDFIAVMMEQDAKSVEGVELYTIENPPSLISNNERAENTNEDEMGHGWVAVGRLKSERYSDMNFTLLSPNATNPDETIKPHEIIRARWSVSLRRNRYNLEDRQGYSGTSLGLLWGGQCAKVIDSRLDRRGQTWAFIVIVQCPPTTKSDPGFERSAMSGVRSSFR*
Ga0126373_103119873F007784AGGAMKKLFLASVAALSVLSTSVAYAADESDSPLPRFRPWQQVWQCNDIRVTVTARDPFSIEYDLGGTIWGGSRFTVIKGELYFNARPCLPLQPVGY*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.