Scaffold Ga0126373_10029376

Overview

Basic Information

• Taxon OID: 3300010048
• Scaffold ID: Ga0126373_10029376
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4738
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041363	Metagenome / Metatranscriptome	160	Y
F057033	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126373_100293764	F041363	AGGAG	MKKKEDARLAILREYDRWAKHHPDDAKKMGGYVFFGYLEKEKPELLDFRASGSKWQIVHLWLRHGGRLKD*
Ga0126373_100293765	F057033	GGAGG	MRKQKKFTQQKKFIPRAIRPKDEQAKERMAEALAAYHGPITKCPQAGVRVAKSRPPS*