Scaffold Ga0126373_10016907

Overview

Basic Information

• Taxon OID: 3300010048
• Scaffold ID: Ga0126373_10016907
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6073
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010061	Metagenome / Metatranscriptome	309	Y
F026233	Metagenome / Metatranscriptome	198	Y
F102921	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126373_100169072	F010061	GGAGG	MLFAIVRRGKKSGIRLFPHRYQEDDRYHVSLTKAGPPIPLADDRDIPDYLANGYLLSMSNSDEGYSPTLISPKSIHGWQ*
Ga0126373_100169073	F026233	GAG	MQTAHGEIIFAVGKDFTLTADQILGLLERDELHSEGVRKLVEAAEKQSRTPMRRQAESL*
Ga0126373_100169075	F102921	AGGAGG	MRISSLFLKVSLGGAGLWLALCGCTKAAAAQATDWAALTQKSSIIFSGTVSQLAATSFADVPKSAQTIVVKLDSVEKKPAAVLLKKGDSVTVEVEDAPAFREGTHATFYTDGWIVGAGVAVKELGHEVGTAAEPVQATSAGKPSGQGKDEISDQELLDRMKASDFVVVGRVTDVHKWNVPEPKSGAPSRVTEHDPDWHEAVLEVQSVLKGGKVKGNKVIVRFPNRNDVAWVSSPKFAKNQRGIFCLNRDQSTGALASAGGQQANVYTCLGHGDALPISEEARVRSLLKNP*