NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126373_10000054

Scaffold Ga0126373_10000054


Overview

Basic Information
Taxon OID3300010048 Open in IMG/M
Scaffold IDGa0126373_10000054 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104607
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (61.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005007Metagenome / Metatranscriptome415Y
F051290Metagenome / Metatranscriptome144Y
F062092Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0126373_1000005435F062092AGGAGMLKKFVGVGAMILSLTLGLTVIHGKAQDAAPAKAAPEAIEPRHAYRVDFVLTEMEDGRKINSRQYALNLNAGENDQLKVGTRVPVEVKQGEIQYLDVGTNLWCRLRDRSNTEPSEHGLRELSWLGNDVMLNVTAEVSSFAVPDQQGASPRPAIRQMKVEGSTIAVVGKQMVVGIVDDPNSKRQYQLEVTVTKLK*
Ga0126373_1000005449F005007AGGMTIPIRGTAALVVAAAIVAATAIWLPAYRWFLLISIGIGAGVAGGLYLWRKLRPVKEDDIENKRPLGLS*
Ga0126373_1000005466F051290N/AMRKRRIQFAIVLTTVLQVSCSPRDFLTRRFASDLISSSAPFKTSQRFVLQTGVVSSKDYPTPEYLVFQHHGWISANSAPCPRDLTPPPCWDILLTPAGVDAVRAALSPDQTGTSQLSIPVAKRALVGVTGIAKQGNEGDVEFIWKWVPLNEIGAALYSGDVHYKSVVGFRDYDDGWRMMEGAPRSGQSIEDALKNSEPTP*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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