Scaffold Ga0126373_10000042

Overview

Basic Information

• Taxon OID: 3300010048
• Scaffold ID: Ga0126373_10000042
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 129493
• Total Scaffold Genes: 125
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 69 (55.20%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000238	Metagenome / Metatranscriptome	1494	Y
F011536	Metagenome / Metatranscriptome	290	Y
F051484	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126373_10000042102	F011536	N/A	MSCFLVISVWTFRAHGQTPYQISASENIRATALSNQEFHCHTGYPLAQCQRDILQLKHVLSRYPIAGLGHWTWVLVRSQDWKLISRTLRLNPISPAFSALEPRETFLEEALFTHDPQRTAELMQEWLSSMPKLLELAVSHELGHAFCAEPNETAADRFAGDLRKGLAPPCRISTQKRRENVATEERQGFTPNSLRAP*
Ga0126373_1000004225	F000238	N/A	MRRNVADSPARRPPRWYGIPVRVLLATFVGTLICFAVSLLVGILGTVIASAVRGIHPDMRIAYRLIALPIASVAGTVIFVFSLVMEIRHYRQTKALSGIERMS*
Ga0126373_1000004292	F051484	N/A	MRFCLALIFLMWTLAAAAVAQVPSSSSSKPKKSSSSRSIPDITAGTVANGVYRNRGFALACKIPPGWVLRTEEMNAREAADSEDGGLETKSSPQGTQGNTGEGGRVLLAAFSRPPDARGEDVNASIVIAAEPVGTYPGLKEAAQYFGPLTDVAKAQGFSVDAEPYEIAIGTKVVVRGDFHKDVGSRVMRQSTLAFLAQGHAVSITVIGGTEDEVEDLIEGVSFGAGK*