Scaffold Ga0126382_10058137

Overview

Basic Information

• Taxon OID: 3300010047
• Scaffold ID: Ga0126382_10058137
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2306
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006655	Metagenome	367	Y
F009201	Metagenome	321	Y
F068242	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126382_100581372	F006655	AGGAGG	MKGLRAASVIAVLSVLAWVATVNAKGAWVLWKHSYEVWVDSNKAEHRREVAWEKVAAMPAKSGCEDRAASEARVEYDTLTGKGARATLMGSQVAFDQQKTRFTHGYRRFECWPDTVDPRGPKAK*
Ga0126382_100581373	F009201	GAG	VKQVCRICRELGEIKAERLCAECVRIKSQISVRFAEAVRGTIAIPAERRCERLGCSCGACDGRTLDTHPLYLFDLAGADQREIHFHPRCHELWLEAVNGLNSGPEQAIDIIQG*
Ga0126382_100581374	F068242	AGGAG	MKLRDATRTDRGAVTYVWPPQLLVQIGPMIVQPGEGVLKSVKRFGNRLSLTVEHEGQEAWGGVEVEQNERPSVEAVERVLKASVGKAIEEIGDLDVG*