Scaffold Ga0126382_10011405

Overview

Basic Information

• Taxon OID: 3300010047
• Scaffold ID: Ga0126382_10011405
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4288
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029527	Metagenome	188	N
F069142	Metagenome	124	Y
F077585	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126382_100114051	F029527	GGAGG	MKPRIVAICAIVAFVTCGDSAPAQFTDCAYITVFNPCPVSSETRGECEPIIDPQIACQDCPPGAAAWWVLNNRKDEEAKVTIRVTLWDRALGTSTFTDQALTLAPGETRPLGCSLPAPQPQYTWSIEDCQPHSEQVFAPEQLTPTEKKFADAQDAFIDHVGQLWNANLESNYRQLVPGTVRVELSTSPEGELVETSVLSNTSNELAAQLITDAIRPAIRFLATGKSSKITAEVTAFAAEGSDLEPRHKRPVFNVSVSQGGLHYPYERSATFSFHDLSELNGLGPK*
Ga0126382_100114052	F077585	GGA	MPRRLNKQTWAELRRLFVAGWSLGQLAKRFNISKGTLAARAAREKWSRERVEGQTLQPNQITLSDDPRLAEIQAIVQDCKLAALEAEARTAKALALKAAKAVETVEINSMEGITQAQTYRSNLWPSVSPSIKPAVDAAQRGERLVVSEETKKYVEQLKMLM*
Ga0126382_100114053	F069142	AGCAG	VKLTDAQRSHLEELLRNRPQWFKEKVLADIAAEERRDDEDDTPRAGLSAYTLACLECELGIM*