NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0126384_10105696

Scaffold Ga0126384_10105696


Overview

Basic Information
Taxon OID3300010046 Open in IMG/M
Scaffold IDGa0126384_10105696 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama - MetaG Plot_36
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2087
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009343Metagenome / Metatranscriptome319Y
F015838Metagenome / Metatranscriptome251Y
F026513Metagenome / Metatranscriptome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0126384_101056964F015838GAGGMRRRIVALLQLHEHPEGLTPAEMRTLLRVDKSLTDTCFGMLRYGLVQRVGRGRYVATETSRTHQP*
Ga0126384_101056966F026513AGGAMRTPALPSRDERGKRWLQAKVQQILADSAVALAPPRAEGALSCYWGTGPETATTLYLRLAGDPEPKALPFRRTMIAQCGAGLRFSQHNAILWIRRKLKKLGILSA*
Ga0126384_101056967F009343N/AISGRLRWDTTKAATPIWLLFLDGLPGDAPTMLPEYDTSLPRDASPAEVARLTGEMLSRETGHLPQQVQFTQIEKGPVYYFVATCEGPA*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.