NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126311_10808480

Scaffold Ga0126311_10808480


Overview

Basic Information
Taxon OID3300010045 Open in IMG/M
Scaffold IDGa0126311_10808480 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)756
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8712Long. (o)-122.4276Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006781Metagenome364Y
F068446Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0126311_108084801F068446AGCAGGMAEAAKGITPEIAPEVTQEIVAEATEQAKEAPSRLRQTLRELEAKWERTST
Ga0126311_108084802F006781N/AEPRRGAAVTKIVKILLLVAILTVTLAVSPAQACACGVPDWSVMSAEEIVSAINGAEDEPRVMAGQSGELPPAPPGYRYDENYRLVLL*

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