Scaffold Ga0126311_10022723

Overview

Basic Information

• Taxon OID: 3300010045
• Scaffold ID: Ga0126311_10022723
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3749
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8712
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000230	Metagenome / Metatranscriptome	1517	Y
F006916	Metagenome / Metatranscriptome	362	Y
F062509	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126311_100227231	F006916	N/A	SSKLLKDHNHIETVVEVAGMGRLVLDVDSAGGYSLRAYPEGIEDPSRDLLAVGVVRAEGIVAVHPEGLTAVDS*
Ga0126311_100227234	F062509	N/A	MTEGENYRDLLTRLSTALAMTEAAYLEARRRRDL*
Ga0126311_100227237	F000230	AGGAG	MSEQAKKVKHKNIPEWAQGLYYNSGLMSEVLVYYDEEAIYFEHRGKESGIVRFTFEMIEGLKIVEEEGERQDSTQ*