Scaffold Ga0126311_10000004

Overview

Basic Information

• Taxon OID: 3300010045
• Scaffold ID: Ga0126311_10000004
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 262402
• Total Scaffold Genes: 229
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (61.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8712
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007137	Metagenome / Metatranscriptome	357	Y
F026703	Metagenome	197	Y
F045815	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126311_10000004176	F007137	N/A	MFCKNPSLLFRHSSRSYFAEDKEQTMATATKSTVIKIKVNFQLNTPNGLRRVIFGLEKDTQGDVVSWAINFQLFERAKKSDPFGDPIVSLDVDVDKALNSKAEKASKGLTAPQAAFALGPAADDAKAAESGEIDQDDAQKTVQKTLKK*
Ga0126311_1000000430	F045815	AGTAG	MDLFSNKGVRLLLAVSVSIWMAGGCLFGCASNVMGAEMAQTSQNVMDAGMSCHAKRSHANGPSFTPSASGMMNECPLVVNSTAVTSKNSTHLPDPGRGSVAALPSFKKQIARPDNTLVAPFLPNRGPTHLRCCVFLI*
Ga0126311_1000000443	F026703	GGAG	MIFLRLVAVGVVLLVVASCRSQNESLTNTTPSPETIVSSTPPFQTKEPERYRAVRTITASADGRTVVTRAFVARDGQLRRYETTGTPKTTILLDTPEGKFFLLPDEKVYADFTDQSRISADKNEEGLESSPDALLHTDAESTSYQKLGNEVIAGRNTNKYRIVVNSSTAPNVSQSETLMWIDEALQMPIRSETKSDGTHVTMEISEIKLEVDKSLFTIPEGYQKVSFDEFRRRLTPE*