Scaffold Ga0126311

Basic Information
Taxon OID	3300010045 Open in IMG/M
Scaffold ID	Ga0126311_10000002 Open in IMG/M
Source Dataset Name	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300010045 Open in IMG/M

Scaffold ID

Ga0126311_10000002 Open in IMG/M

Source Dataset Name

Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	304536
Total Scaffold Genes	245 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	117 (47.76%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

304536

Total Scaffold Genes

245 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

117 (47.76%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location Name	UC McLaughlin Reserve (Lake County, CA)
Coordinates	Lat. (^o)	38.8712	Long. (^o)	-122.4276	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

UC McLaughlin Reserve (Lake County, CA)

Coordinates

Lat. (^o)

38.8712

Long. (^o)

-122.4276

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001123	Metagenome / Metatranscriptome	770	Y
F001576	Metagenome / Metatranscriptome	669	Y
F003258	Metagenome	497	Y
F004628	Metagenome / Metatranscriptome	430	Y
F083122	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126311_10000002113	F001576	N/A	MGISLSVLVCLALFTTSHAQKPATSDADTKQVQKDSKPADAKPTARLPYTIKIKTRPIVNISLKAEKAKMSEVAQEISKQLKVPIYLGTERQNERVTIEFSELMLEPAMQLLSPTVYVDYEIDTGSGAPPKALAIYLFDTNQGEPPLTTVVNGSSQSMLIEGNTEDGVEPQTDDEKKKVEEQPLRIQFKDNLLSVKAKKQPVALVLLKIGEELGIPVDIQDQNVATVIDAEISKLPVEDVVRQLSTQIRLFVRADLTRAERRALRLVLAEPPKATQ*
Ga0126311_10000002114	F001123	AGGAGG	LAKQNEIINEEVAGLHNSVNGEGSEIKKVFVEPTISVPVDVLEATTFFQAATSGATN*
Ga0126311_10000002159	F083122	N/A	MDKGKNLPPVDNSVSDSTGQYDLRFLLWRQFCAQYQIPVDTLPSQLDDEQKELWEEMKAKRLKT*
Ga0126311_10000002198	F003258	AGGA	MRTLTPGQWYLRFTCEHCQQKEILFADLSHGQTKLKATYVVQCSSCSHTGSYDGDDIERYQHPLSADA*
Ga0126311_1000000268	F004628	AGGAG	MPRSLFYRHLAILLLVLPFLFLSGPDAFAQRNPGREVRLRELLSVPGKVISEAKSARPTTELKLTGYRVEEIKLPRQLNVELRGQQVAVDKAWRVTLQGGPFPVRAMPAIIWIDDEIAGYGIENETLSQITAITFDSSLIHEGAVVSISYSEDKEGRLRISQRLRLTREGGNQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0126311_10000002

Overview

Ecosystem & Geography

Associated Families

Sequences