Scaffold Ga0126310_10013712

Overview

Basic Information

• Taxon OID: 3300010044
• Scaffold ID: Ga0126310_10013712
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3865
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8711
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001016	Metagenome	805	Y
F002864	Metagenome / Metatranscriptome	525	Y
F016368	Metagenome / Metatranscriptome	247	Y
F021723	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126310_100137122	F001016	AGG	MGPQDPKDVTRDTARDLAGLAGELAALKADAHHWLTGPEYAALRYRLEDAHAAVEAALVEARRKVRLNEEPPGG*
Ga0126310_100137123	F002864	AGGAGG	VAEIGEEPVRIPKEVLEELESVRRYTRAEVLDIPTIRHVAMETAKPALVVWIDKHEQEYGQGLLNGFQAED*
Ga0126310_100137125	F016368	AGGAGG	MSGLVVLKAHKVNKVLPPGYRVDHDPHVAVLRRPDGSVVAYLPIWTMSPERILRAAELDLATGDLAMDH*
Ga0126310_100137127	F021723	N/A	FHEKFGYPSREIPDIWVGQYVAVNMLGGRGGDRQLAPTRASGMLEAIRDDGFVISVEDRVVFIPRESVLQMELYETRGRGSRLRLERNTPEPADPSDPGTIGSE*