Scaffold Ga0126310_10000586

Overview

Basic Information

• Taxon OID: 3300010044
• Scaffold ID: Ga0126310_10000586
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12886
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8711
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000280	Metagenome / Metatranscriptome	1383	Y
F000805	Metagenome / Metatranscriptome	883	Y
F001079	Metagenome / Metatranscriptome	785	Y
F028904	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126310_1000058611	F028904	AGGAG	MNRPATQTVNGSLAFDRGIREQLAMTRNAVSAGEDKELRDAVHPARWERRGVFRRLRRRPGLSAVV*
Ga0126310_100005863	F000280	AGAAGG	MASRDQEHGPGPARPLVGYRDVGEDVRHSRGSLIRAWIILAALAIFYLGWTLIVFFLEPGLR*
Ga0126310_100005864	F001079	AGAAG	MAAAEVAFPSVLPYVSWSSLTIAAVPADAWPQVFGSMQALKGHVQEYPGCQKLEAFVHAEAEGAVRIHCYTTWDTPEQLEAFLERGYTFERMLVDVAGLAAQPTLIMEKVF*
Ga0126310_100005865	F000805	AGGAGG	MGIPSGESPAKAHQYYEYLQSHQQTQQVPATWHVRWLDLAWLWGFLIVLSLIIIWWLWQYRSTRQRAGLYPVDQFGGYTSELAGPATLFFILFCVIITAWAVVLIVGHIVWGQKF*