Scaffold Ga0126310_10000377

Overview

Basic Information

• Taxon OID: 3300010044
• Scaffold ID: Ga0126310_10000377
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14906
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8711
  • Long. (^o): -122.4276

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000230	Metagenome / Metatranscriptome	1517	Y
F007281	Metagenome / Metatranscriptome	354	Y
F027648	Metagenome / Metatranscriptome	194	Y
F069940	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126310_100003772	F027648	AGGA	MVMQEKTPTNKDEGLQGGRYARTEEELYKKALALLEKCKFEPGRSGQEMSELEPAA*
Ga0126310_100003773	F069940	GAGG	MTHDARNDAQRALYALLAGAEGCGPAARSARLAQDDELADFLCRVQEEIVGEAKRLLVRRVAE*
Ga0126310_100003777	F000230	AGGAG	MSEQARRVKNKNIPEWAEGIYYTSGLISEVLLYHDEEAIYFEHKGKDSGIVRLTFEQIEGLKIVEQENGSSPK*
Ga0126310_100003779	F007281	AGGGGG	MTMRPAYKGGEGMASEQYYALCVEEEDGSTEIAFFELRREALPGALGISLYTSPDGELQRRHLQKEDDAVIVAKSPRDLLEAMNTGVPSTMFLDRKRIAGSVFKAMLHNALGISLRQPRLIRLDEPDEI*