Scaffold Ga0126380_10546506

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10546506
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 900
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium quebecense (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005830	Metagenome / Metatranscriptome	389	Y
F012501	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_105465061	F005830	N/A	MAPKSNREEEKKMNKQWESKRSRVEHADDARITFTIALHGKHAWEMLLEDSHRYHSISHGWATDNSHDWEEVIAPVLRRLFVNGRLGFATKVPMYDSPNASSANTNVPMYDPPLCSPATRAETNLSTGTESFHRVAA*
Ga0126380_105465062	F012501	GAG	VTVQHRNDDYRWPQKSNREEEKKMTKQMTPAEIEFLQQSFARFVPISDKAILVGVEPGPCPPPKIPAAIALASVTMK*