Scaffold Ga0126380_10320086

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10320086
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium altum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006248	Metagenome / Metatranscriptome	378	Y
F040016	Metagenome / Metatranscriptome	162	Y
F042056	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_103200861	F042056	GGAG	MWGKNLLFAAREEAADRHLFALAVMSDTSHDYTDAKVLQNWLSGVIGHLEALPEPTQIALGLPLFKIGDEHFYWRADQIKSWHKERCRLLRQQLSELQREQWQ
Ga0126380_103200862	F006248	GGAGG	MSFQVVRHEHPNIFVVNRQTYETYRFTVGDHVMLSFDGAPSDLSKARRTAIAFLAQNQTKIIRRR*
Ga0126380_103200863	F040016	GGAG	MLNKTDQSDRAPSPNEKPENCYCSALPKGSDLCLPCY