Scaffold Ga0126380_10006398

Overview

Basic Information

• Taxon OID: 3300010043
• Scaffold ID: Ga0126380_10006398
• Source Dataset Name: Tropical forest soil microbial communities from Panama - MetaG Plot_26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5035
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location

• Location Name: Panama
• Coordinates
  • Lat. (^o): 9.1086
  • Long. (^o): -79.8436
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054311	Metagenome	140	N
F073196	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126380_100063983	F054311	N/A	MKQWKVALSLAILGAVAAPFVTHTVRMRPTTETWIPLTQDEKERLSAEMSKTSNCRTLSEQFDAKKNMGIKPSVEDFMDVISRDSTCRDQLKSLELGGHVESHPSLVKYVVLNLASALAGFGIVFGAAMVIAFPIQRYWRRHHT*
Ga0126380_100063989	F073196	GGA	MTNTNERATAHVFGTSEYRTTQAFGLSLTAIFVGLLILNGISF*