NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126314_10431592

Scaffold Ga0126314_10431592


Overview

Basic Information
Taxon OID3300010042 Open in IMG/M
Scaffold IDGa0126314_10431592 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)951
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8723Long. (o)-122.4268Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007136Metagenome357Y
F009947Metagenome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0126314_104315921F007136N/AMAGGMTARTFDYFALLVAASIVALCSGVFATLCVKYEFRRYAQIFAATFFVSAVFAAYCLGKLL*
Ga0126314_104315922F009947GGAGMVSRGGTVGAGPWNTDWAVEKAAEALRYLGTHHPGCLENLRVLDEHETAAHEAALLGDREGYLEALRSYMKDGRDEDLRIRRGAA*

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