Scaffold Ga0126314_10248035

Overview

Basic Information

• Taxon OID: 3300010042
• Scaffold ID: Ga0126314_10248035
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1263
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8723
  • Long. (^o): -122.4268

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056387	Metagenome / Metatranscriptome	137	Y
F088457	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126314_102480351	F056387	GGGGG	MGGFARAFLRPAFVFILVAAVVALLIVGIGQLLLHLHPEMVEHEVSGLAATVQEFIRPELLMALGLSLVVLFGGALLSRPRGEPRPLDEPVAIGERPFFAPVTPPPTDEEMTRRGPLGTWADIEPDFTLYARNGALAKVIALLPGEDEYGKSRRGILYASGLYGANDEMWIPLEAVYAVYPETGSAFLAAKGDEIEHFGWNLPPESFRRGQSV
Ga0126314_102480352	F088457	GAGG	MISLPTNRDGSDDEEQEGAAAVWAFLLVLFFFKLATVILIFWHLRSWESGVILGATFWYWIPPLLLLGAGPVVFYYRLRKVRARREALRRSEWMVGDDQDVDVRSTQTR*