Scaffold Ga0126312_10072662

Overview

Basic Information

• Taxon OID: 3300010041
• Scaffold ID: Ga0126312_10072662
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2320
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8723
  • Long. (^o): -122.427

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007136	Metagenome	357	Y
F030872	Metagenome	184	Y
F039477	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126312_100726621	F039477	AGG	MSLRNWIKRLEHGAGEGLASFVLEDGSRYYFNPESGECFLHSMACLRAQGECEPFPEPPETVKAIAKARDRRAALNQLYPNGSFGIFPYEVEALVERGELVPRSLVAGRELGEPLPDLSE
Ga0126312_100726623	F030872	N/A	LAVRCAGTKRDNSPYTATVEPPKRFCWWHDPANADKRRRAASKAGKSKPSRELARIKQRLSDLAEDVLEGRQDRAVAAVVSQVLNVYLRAVSVELKVREQLEIVERLEALEEGLKQNKGGSSRWGA*
Ga0126312_100726626	F007136	N/A	LMEGTITARTFDYFGLLVAASIVALCSGVWATLCVKHELRRLAWFWAAAFFGSALAAAYCLGKLL*