Scaffold Ga0126312_10056845

Overview

Basic Information

• Taxon OID: 3300010041
• Scaffold ID: Ga0126312_10056845
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2628
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8723
  • Long. (^o): -122.427

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002070	Metagenome	596	Y
F003271	Metagenome	496	Y
F054650	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126312_100568451	F054650	GGAGG	MILALWLLSLPFHCLAALGLRRSVILACLFVLAVTAYGVAEDLGLLDLPARAAPAPKPAARQPGPSRAAVADIPAGYLRLY
Ga0126312_100568452	F003271	AGG	MTAAFLNLLGWEQLTAAEQAAALAGAGLGLVAWLLARALFGGRRR*
Ga0126312_100568456	F002070	GGCGG	MTRQVDELARHVRRLGNHELNELLLQLPKPSFAALVEVALARPVLPAGLVLRFEPAPGVDGWTVVACAPRRQLGTLTRHLDAGGRVVYRVWTRAGDPVQLGGVGWWRRRLDAGAALAWVTPASGARCLALAAHVRALPDWQLHELLRGLPQERFDQLVEAAYAPEGSAA*