NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126308_10400375

Scaffold Ga0126308_10400375


Overview

Basic Information
Taxon OID3300010040 Open in IMG/M
Scaffold IDGa0126308_10400375 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)916
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8708Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002921Metagenome520Y
F100482Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0126308_104003752F100482AGGTGGMDGDHLCRECDGTGWVLYRSETKDGEFEEAYRLCPKGHAPRYCMGSSSGHFCPRPATVRCGPGYYCEEHIVAIYDGKDTDDPCEPI*
Ga0126308_104003753F002921N/APEEPPHDHQDDIEAHYASLERVRPCACIGGWVFVGYVDEYGEEREDSYSCRRCVDKS*

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