Scaffold Ga0126308_10112387

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10112387
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1683
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007281	Metagenome / Metatranscriptome	354	Y
F016872	Metagenome / Metatranscriptome	244	Y
F051755	Metagenome / Metatranscriptome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_101123871	F051755	N/A	ARRSQADRGGALMAGYLSKEWNGQRIAVRFGSGRGFDARLVDNNAGGITVEAIKEEGTEEDHALRAFVPWAAVRYIQLLEEPGEPDEPDGA*
Ga0126308_101123872	F007281	GGAGG	MADEQYYALCVEKEDGSTQIAFFELGGDALPGALGISVYTAPDGELQRRHLQDGQVVIAAKSPRDLLEAMNTGVPSSVYVDGEQIAGSVFKAKLKDALGMPLRIPRIVRPTPDPE*
Ga0126308_101123874	F016872	AGGAG	MHDDQTAQDATRLLVAFSTNHPEARLVRPHGMDRPFTPNWADAEQAGLERARRDSAMGWLVDKNMLEREEEAEEPRGTGEGFHSEYGSVF