Scaffold Ga0126308_10023152

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10023152
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3376
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002070	Metagenome	596	Y
F003271	Metagenome	496	Y
F054653	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_100231523	F003271	GGAGG	MTAAFWDFLGWDQLTAAEQAGAFSGACLGLAAWLARALFGGRRQR*
Ga0126308_100231526	F002070	GGCGG	VTRQVDQLARHVRRLGNHELNELLLQLPQPHFAALVEVALARPLLPAGLVLRFEPAPGVDGWTVVACAPRRRLGTLVRDHDAAGRVVHRAWTRTGDPVQITGLCWWRRRLDAGAALAWVTPVSGARCLALAAHVRALRDRQLHELLRGLPQERFDRLVEAAYAPAGSAA*
Ga0126308_100231527	F054653	N/A	LDGDPRILIPLPEVAQRLGISRWQAYKLARSGRLPTTRLGARDLHVPAAVLRRIEQEGLPPASEGGEVA*