NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126308_10013018

Scaffold Ga0126308_10013018


Overview

Basic Information
Taxon OID3300010040 Open in IMG/M
Scaffold IDGa0126308_10013018 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4282
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8708Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009947Metagenome310Y
F023050Metagenome211Y
F079464Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0126308_100130181F079464GGAGGLAGYLPKEWNGQRVAVRFGSGRGFDARLVENNAGG
Ga0126308_100130182F023050GAGGMSLRGWMKRLERRAREDLESFELLDGSTYYYNRLETHKELFLHAYDVQLGEADKWPVPPEVYRKMCEAKNPAAVVERLNPEDPQRAFVNLAELYDTDALVHERRLVPLAHAPAEDLSE*
Ga0126308_100130186F009947GGAGGMSATPGKAVEPWDCEWAAERAADARKYLGRHYPECLENLRALDEYEEAAHEAAMASDKDAYLAALRSYCRAGRDEALRIRRGAA*

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