NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126308_10005815

Scaffold Ga0126308_10005815


Overview

Basic Information
Taxon OID3300010040 Open in IMG/M
Scaffold IDGa0126308_10005815 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5838
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8708Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011187Metagenome294Y
F014785Metagenome / Metatranscriptome260Y
F016368Metagenome / Metatranscriptome247Y

Sequences

Protein IDFamilyRBSSequence
Ga0126308_1000581511F011187AGGAGGMDFDFPAPYDHEVPRRIGEARRHLSSEGVAVLEGVIAETGNLEDVIVAMESLPASDRRVLVDVSRFFAEAYDARIRESEGWAGLQRHLAALILRARELDPSLRAGATLGEALVVLKRHGEPLGISDEVLEIAVEMTEE*
Ga0126308_100058153F016368AGGAGGMSGLVVLKAHKVNKMLPPGYRVDHDPDVAVLRRPDGSVVSYFPIWSMNAKRLLQEAKLDLASGHLANS*
Ga0126308_100058159F014785GGAGVATLYCPCGQSHELWGEFWWTEGRYQWVFFDYEQTSETYAEQVENCPACGRRLERKNLLS

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