Scaffold Ga0126308_10002661

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10002661
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7716
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007136	Metagenome	357	Y
F009947	Metagenome	310	Y
F016368	Metagenome / Metatranscriptome	247	Y
F021723	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_1000266111	F009947	GGA	MTHARKPVEPWDTDKAAQLAADALRYLGRNAPEVLENTSVLEPHEEAAHQAAMRGDEVAYLEALRAYCRAGRDEALRIRRRAA*
Ga0126308_1000266113	F007136	N/A	MMVGSITARTLDYFGLLVAASVFALISAGVTALCIKYEERWLAWFWTAAYFSCGLAAAYFLWRLL*
Ga0126308_100026612	F021723	GGAGG	VPDANELKLLASRQEQKFHEKFGYPASEVPSIWVGQQVAVNMLGGRGKDRQLAPTRASGMLEAISLDGVVLSVEDRVVFIPRESVLQMELYETRGRGSRLRLEQ*
Ga0126308_100026613	F016368	AGGAGG	MSGLVVLKAHKVNRILPPGYRVDHDPDVAVLRRPDGSVVGYFPIWSMNPERMLRQAELDLASAHVANS*