NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126308_10002661

Scaffold Ga0126308_10002661


Overview

Basic Information
Taxon OID3300010040 Open in IMG/M
Scaffold IDGa0126308_10002661 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7716
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8708Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007136Metagenome357Y
F009947Metagenome310Y
F016368Metagenome / Metatranscriptome247Y
F021723Metagenome / Metatranscriptome217Y

Sequences

Protein IDFamilyRBSSequence
Ga0126308_1000266111F009947GGAMTHARKPVEPWDTDKAAQLAADALRYLGRNAPEVLENTSVLEPHEEAAHQAAMRGDEVAYLEALRAYCRAGRDEALRIRRRAA*
Ga0126308_1000266113F007136N/AMMVGSITARTLDYFGLLVAASVFALISAGVTALCIKYEERWLAWFWTAAYFSCGLAAAYFLWRLL*
Ga0126308_100026612F021723GGAGGVPDANELKLLASRQEQKFHEKFGYPASEVPSIWVGQQVAVNMLGGRGKDRQLAPTRASGMLEAISLDGVVLSVEDRVVFIPRESVLQMELYETRGRGSRLRLEQ*
Ga0126308_100026613F016368AGGAGGMSGLVVLKAHKVNRILPPGYRVDHDPDVAVLRRPDGSVVGYFPIWSMNPERMLRQAELDLASAHVANS*

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