Scaffold Ga0126308_10000395

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10000395
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14101
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019902	Metagenome / Metatranscriptome	227	Y
F027428	Metagenome	194	Y
F038846	Metagenome / Metatranscriptome	165	Y
F075690	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_1000039512	F027428	GAG	MSRRNPPGTGMLRLSAAILLTGGPILALLFRSWGAGSLVFGLGAIVLGVRQVRLGENRSERFLGVALLLGGAFSAIEGLIRLLSGASP*
Ga0126308_1000039517	F075690	GAG	VGEEPEPSALPKLVSVPVLVAVAILGFAVIVLAHLFGPQNILREVLTEVVASFGSTLLVLAVFGLLFRSGLERVLRGAPGGEAFMESAERLKDVLQNLDERDDKAQGTRYEAKLDRIGEDVRSLADNELPALRSEIAELRKLLASLEHERHH*
Ga0126308_1000039520	F019902	GAG	MLRENVLRNLASRAATDSEFLRQVRKDLEDTLARYDYHLTAEEMRLVRDLRHQTAQMSDEELSRTLAGGLERRTGGPPARPAAPSWRGTGPARPARPGR*
Ga0126308_100003958	F038846	GGA	MPMLPDDQQLLTDKQLREASDEQLQGLIARLDLLLRSKGQPGLTTRSPEDQRRHGPEPSGPADPADPAGPGVG*