Scaffold Ga0126308_10000002

Overview

Basic Information

• Taxon OID: 3300010040
• Scaffold ID: Ga0126308_10000002
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56518
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (86.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8708
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009670	Metagenome	314	Y
F014103	Metagenome	265	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126308_100000022	F014103	GGAGG	MKARTALLKLFKDSSEWRAFFRSCCEISALRLRTQVWQFREELKERDHGFPIEEVEDALLGLARDLLPDTQAAQWDTEWAHDLCKDALALLAKRYDELSTADKEAVDLSGQGVWDERMYAAGLANDPVAFRVALDGWTRAGLDAMERSRIKGGAA*
Ga0126308_100000024	F009670	GAG	MDVRVEKILDDGAYDAKLVNVEQKETRFGDRLMWTFEVAGEDAEVVGFTSMSPSTKAKAYQWAAAIAGEIDPKLGWGPEDLIGGECVVVLEAAEDAQGTEKNKVVKVKPPRINRPAASKGEADGPEGDVVQIPL*
Ga0126308_1000000248	F014103	GGAGG	MKARTALLELFKESIQWRVFFRSCCESSAFRLRSQTPQFRDELKERGRGFPTEEVEDVLLGLARELLPDTPAAQWDAEWAHELCKDALARLSERYAEFSDAEKDAVDLSCQDVWDERMHAASLANDPPAFWVALKGWEQASLEAMQQVRVQGGAA*
Ga0126308_1000000250	F009670	GAG	MEVMVEKVLEDGAYDAKLVNVEQKETKFGDRLMWTFQVNGENTEMVGFTSMSPNTKAKAYQWAVAIAGEIDPTLGWGPEDLIGGECVVVLEAAEDAQGTEKNKVVKVKPPRTNKPDASKREADGSEGELVRIPL*