NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126309_10074618

Scaffold Ga0126309_10074618


Overview

Basic Information
Taxon OID3300010039 Open in IMG/M
Scaffold IDGa0126309_10074618 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1688
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8707Long. (o)-122.4274Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004746Metagenome / Metatranscriptome425Y
F035469Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0126309_100746184F004746GAGVVLVRDGHRRRQFAGMRGTVRHLWGPPEHAAVDVLLEDGGSELFWLSDLSVVDEDIAAV*
Ga0126309_100746185F035469GGAMLVGHEGTDGRNEYWLPFGYYLERDADLLVLRRSGGSLVAAFSALGVDPFEVEL

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