Scaffold Ga0126309_10013298

Overview

Basic Information

• Taxon OID: 3300010039
• Scaffold ID: Ga0126309_10013298
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3447
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8707
  • Long. (^o): -122.4274

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006197	Metagenome	379	Y
F033335	Metagenome	177	Y
F049417	Metagenome / Metatranscriptome	146	Y
F102649	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126309_100132981	F006197	GAG	LGAVTRQSVALGSPMRLVGGTGSSKEVRLPPGYSLDLSDTDVLILRCPHGTAVARLSARGATAEAIEREAKMHYRARTRPA*
Ga0126309_100132984	F033335	GGAGG	MNEGERDRLRRAVERLMIGHREALGVIDREVEDQESSAQETLAEVHDIFSGAYEDAQTILSGEQGVA*
Ga0126309_100132986	F049417	AGGA	VREEEIMQITPAPWGWYAYGQDEQGVEFLTPVVCWALVESSSNVRRVVGLGAHGLGSASRVEEVPGFVEYRYVSQEERA*
Ga0126309_100132989	F102649	GGTGG	VQTHCYQHDPERSQERRRNASRGGKSKGNGELAYLKKQVKDLAADVLCGKVEKGRAAVANQLYNTLIRAIEVERRVKEAEELEERLEAIERVLKGRPTAL*