NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126315_10021523

Scaffold Ga0126315_10021523


Overview

Basic Information
Taxon OID3300010038 Open in IMG/M
Scaffold IDGa0126315_10021523 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3248
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8724Long. (o)-122.4268Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000230Metagenome / Metatranscriptome1517Y
F001245Metagenome / Metatranscriptome737Y
F006339Metagenome375Y
F048770Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0126315_100215231F006339AGGAGMQNDQSAQDARKLLVALSTNHPEARRASPFVGMDRPFSPSWADAEQAGLDRIRRDNAMRWLIDNNMLELQEEAEYQRSEGKELPDYDYVYGAVFRITDPGRELLKE
Ga0126315_100215232F001245AGGAGMSEKALGMLKHMRKQIFGHPAPYVEVRGAAVSIGVDPGGSECNGLVDELLQAGYIRTYPSPSLTAHGLYRMTDRGIAAAQEG*
Ga0126315_100215234F000230AGGAGMSEQARKVENKAIPEWAQGLYYNSGLIKEVLLYHDDEAIYIEHKGKESGIVRFTFEMIEGLKIVEDEAERDGSPQHDGSPQ*
Ga0126315_100215236F048770N/AMYREAIALSIQRHRPDLEVRISPPEAAEEELAAFRPDLLIHDDTVPIPEEVLEGIPTRVEMLYSDSMDARVRAHGMVSQMRDMSTEDLLRTVAVAATIDGVG*

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