Scaffold Ga0126315_10018814

Overview

Basic Information

• Taxon OID: 3300010038
• Scaffold ID: Ga0126315_10018814
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3428
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8724
  • Long. (^o): -122.4268

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042552	Metagenome	158	N
F066521	Metagenome	126	N
F072725	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126315_100188142	F072725	GAG	MDAQSTPGGATNREVGDMSVPLEQMLEELRKAEHSRDLMSEVERRLSAGNTDLENLLRQLEQLGQSLAESDPIRLLIEDAVGAARTRDSIKAGSDVSRSRSAIEGEISSLRGAIQGVQARSDL*
Ga0126315_100188143	F042552	AGGAGG	MHEQREHLLEELRKAQQALTLLKELEPHLTESKGKELEGHVRALKQLAQSLPDGHIVRLVIESALEPSNVGTVGRARSALEGEISTLQGALRYGAT*
Ga0126315_100188145	F066521	N/A	LEAISLDGVVLSVEDRVVFIPRESVLQIELYETRGRGSRLRLERDTPEPTDPSDPRVDPGTIGTE*