Scaffold Ga0126304_10242962

Overview

Basic Information

• Taxon OID: 3300010037
• Scaffold ID: Ga0126304_10242962
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1184
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8693
  • Long. (^o): -122.4282

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012851	Metagenome	276	Y
F023050	Metagenome	211	Y
F095025	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126304_102429621	F012851	N/A	GAYLLAKCSGITQAGTACKGIPIDGSDYCYVHHPGRIEERRRHGSKGGKRGGRGRPIAELGALRGENAQIRRRLLEGELPPNVAAVAVQSINTDIRAVVAVLKAREQEELVERLEGIEEALEQRKAEHRYGA*
Ga0126304_102429622	F095025	GAG	MGLRGKLRRLEDRAQAIAAETQEDEKLERERAIMRMILDEFARLKASGDISDADPLAQAVGNVVAAQYADLGEKSCEYIAEGWIETLREWTRLDWMVKAGRNGAPHA*
Ga0126304_102429623	F023050	GAG	LESFELLDGSTYYYDSLETYKELFLHAYDVQLGDAHKWPEPPEIYRKMCEARDVAAVLKRFQPEDPKRAFVNLAELYDTDTLVRERRLMPLIHEPVEDLSEP*