NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126304_10005431

Scaffold Ga0126304_10005431


Overview

Basic Information
Taxon OID3300010037 Open in IMG/M
Scaffold IDGa0126304_10005431 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6620
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4282Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000972Metagenome817Y
F001245Metagenome / Metatranscriptome737Y
F059713Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0126304_1000543110F000972N/AMANEDTVLEEAMDNLKEAGQRIRSTQSLMRSEGMTDGENYLDLLTRLSTALAMNEAAYLEARRRMELESSKSYLAPALAPR*
Ga0126304_1000543112F001245GAGGVEAGVRKMSEKALGMLKHMRRQIFGQPAPYVEVRGAAVSIGVNPGGSECGDLVDELLQAGYIQSYPSPSLTAHGLYRITDRGIAAAQEG*
Ga0126304_100054312F059713GAGGMTLQCSNITRKANERSVMDISRGEMVERELDTMIERRSRQKDPDEEHELWQESVRRYNARRREENRLAWCEYFCRLAGSLRARAEEYDRRAAVLEARGEGGLLG*

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