Basic Information | |
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Taxon OID | 3300010036 Open in IMG/M |
Scaffold ID | Ga0126305_10285917 Open in IMG/M |
Source Dataset Name | Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1068 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | UC McLaughlin Reserve (Lake County, CA) | |||||||
Coordinates | Lat. (o) | 38.8693 | Long. (o) | -122.4283 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F020506 | Metagenome | 223 | Y |
F024778 | Metagenome / Metatranscriptome | 204 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0126305_102859171 | F024778 | GGAGG | VNRPTHPRNPAGGWQATPGQPIPRAARQPAANGLLLVMLLLVWFSPLSIVAWLLGQVAILLQRRWHWWRFALASLASIGVVLAVTGPAQALRRHVFVPQHFWQYVALHFGFGPPGTRITISQFLGDLIATQ |
Ga0126305_102859172 | F020506 | N/A | YAARSDVLRVLLGRLSPGSPKVTGQLSEQTLRQILGRWEDRGLIARDRLLGYQWVAPTAKAVRLVGLDVRAWSFVIPQLAHVHAVGVVRLALEPSIPEGGRWLSERELRREAGKSHVPDAAIELPEDPATTAGSGLYGEDVDPLPKRVAVEVELTRKGAARLREAWTRPRHGRWQRTAYYAPPEVAGYLTGQLQRIRPRHAIQVHPLPEVPGTSYQRFTRHGGAS* |
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