NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126305_10231475

Scaffold Ga0126305_10231475


Overview

Basic Information
Taxon OID3300010036 Open in IMG/M
Scaffold IDGa0126305_10231475 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1182
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036565Metagenome169Y
F040490Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0126305_102314751F036565GGAGGMDFDFPAPYDHEVPRRIGEARRKLSPEGVAVLEGIIAETGTLEDVIVAMESLPASDRHVLVELSRFFAEAYDARIRESEGW
Ga0126305_102314752F040490N/AVHPALPTTEDQDHPHACLNGYVYLGYTALDEDGEEVERVEALPCPRCAEEAR*

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