Scaffold Ga0126305_10180474

Overview

Basic Information

• Taxon OID: 3300010036
• Scaffold ID: Ga0126305_10180474
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1330
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8693
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001016	Metagenome	805	Y
F002864	Metagenome / Metatranscriptome	525	Y
F036565	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126305_101804741	F036565	GGAGG	MDFDFPAPYDHEVPRRIGEVRHQLSPEGVAVLEGIIAETGSLEDVIVAMVSLPSSDRHVLVGLSRFFAEAYDAR
Ga0126305_101804742	F002864	GAGG	VAEVVRRVSEQEPVPIPRDVLEQLESVRRYTRAEVLDIPTVRHVAMETHKPALVVWIDKHEQEYGQGLLDGFRAEK*
Ga0126305_101804743	F001016	AGG	MGPQDPKDVARDTARDLSGMVGELAALKADATHWLTDSEYDTLRHRLEDAHAAAEAAVVEARRRVRLDEGT*