NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0126305_10035992

Scaffold Ga0126305_10035992


Overview

Basic Information
Taxon OID3300010036 Open in IMG/M
Scaffold IDGa0126305_10035992 Open in IMG/M
Source Dataset NameSerpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2733
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location
Location NameUC McLaughlin Reserve (Lake County, CA)
CoordinatesLat. (o)38.8693Long. (o)-122.4283Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001245Metagenome / Metatranscriptome737Y
F006339Metagenome375Y
F036565Metagenome169Y
F064450Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0126305_100359921F036565GGAGGMDFDFPAPYDHEVPRRIREAPRHLSPEGVAVLEGIIAETGNLEDVIVAMESLPASDRRVLVDVSTFFAEAY
Ga0126305_100359923F001245AGGAGVVEEGVGKMSDKAWGMLKHMRKQIFGHPAPYVVVRGAALSIGVDPEGSECDGLVDELLQAGYIRTYPSPSLTAHGLYRLTHQGIAASRETAAEGGYPHSTAGEAQTGVRRPWWRREC*
Ga0126305_100359924F006339AGGAGGMQNDQTTQDAKRLLVAMSSNHPEARRASPYGLDRPFSPSWADAEQAGLDRVHRDTAMEWLIENNLLKREEETENLRDEEKEVPDYDYVYGAVFRITDDGRELLEEIWQEQRQ*
Ga0126305_100359925F064450AGCAGMDWPELQVGDIEKAMSSVTLFYWGTKEEVGKRWHQKQLELTDEEAKSIGV*

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