Scaffold Ga0126305_10000865

Overview

Basic Information

• Taxon OID: 3300010036
• Scaffold ID: Ga0126305_10000865
• Source Dataset Name: Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13222
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil → Serpentine Soil Microbial Communities From Uc Mclaughlin Reserve, Ca, Usa

Source Dataset Sampling Location

• Location Name: UC McLaughlin Reserve (Lake County, CA)
• Coordinates
  • Lat. (^o): 38.8693
  • Long. (^o): -122.4283

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013711	Metagenome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126305_1000086510	F013711	AGG	MKKILLPIFLLTVTMGYCQNPLQSILKTYFRTHPFDMRFSSFIATLQQDPWFTIETYGRRTDTSFFYITGTYKNFKPFHYSPKELRLILAEEEIIHRDSSKTHDTIMNLQLLGIIDSSAVSSDLAEKEFKRFHKNQGPRFSNNTSNSFKEKDGSLTTKVYNYFVSPFAIAPVTIAWGILPDTNQYAFTITIRFKVRENIATYIVSPDEL*